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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
10
ATAC-seq
7
ChIP-seq
4
Hi-C
2
single cell RNA-seq
1
pCHi-C
Assay category
91
Transcription
10
DNA accessibility
7
DNA binding
4
3D chromatin structure
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
18
February, 2021
6
October, 2019
5
February, 2023
5
March, 2020
5
November, 2019
4
December, 2017
2
December, 2019
Available data
101
bam
93
bigWig
90
tsv
13
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
ibed
1
bed bedgraph
1
txt
Organism
113
Homo sapiens
Biosample type
113
in vitro differentiated cells
92
cell line
91
tissue
54
primary cell
1
stem cell
Organ
6
embryo
5
epithelium
4
connective tissue
Project
113
AMP
Genome assembly (visualization)
106
hg19
99
GRCh38
Lab
112
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
bodily fluid
files.file_type!
ibed
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
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