Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
18
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
132
DNA binding
18
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
77
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
3
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
36
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
March, 2020
6
November, 2020
4
February, 2021
3
November, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
113
bam
100
fastq
67
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
187
Homo sapiens
Biosample type
918
tissue
544
primary cell
191
cell line
129
in vitro differentiated cells
7
stem cell
Organ
133
liver
37
pancreas
30
epithelium
7
blood
bodily fluid
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
184
AMP
5
T1D
2
community
Genome assembly (visualization)
475
hg19
GRCh38
Lab
144
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
35
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
organ_slims!
bodily fluid
assembly!
GRCh38
BIOSAMPLE
ASSAY
191 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
EndoC_BH1
2
18
6
3
1
2
2
1
Panc1
7
EndoC-BH1
1
1
HEK293T
2
+ See 10 more…
See all biosamples
Download