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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
117
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
117
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
64
November, 2017
20
May, 2022
18
August, 2021
16
August, 2017
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
601
bam
539
bigWig
420
fastq
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
328
Homo sapiens
Biosample type
228
tissue
91
cell line
8
primary cell
1
in vitro differentiated cells
Organ
708
pancreas
566
connective tissue
448
adipose tissue
368
epithelium
328
liver
202
heart
171
kidney
151
bone element
98
vasculature
96
blood vessel
67
artery
63
brain
30
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
bodily fluid
11
spleen
8
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
Genome assembly (visualization)
186
hg19
164
GRCh38
Lab
291
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
organ_slims!
bodily fluid
files.file_type!
bed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
328 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
43
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
69
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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