Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
34
DNA binding
10
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
427
bam
401
fastq
238
bigWig
200
tsv
185
bed narrowPeak
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
44
Homo sapiens
Biosample type
32
cell line
6
tissue
4
primary cell
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
44
AMP
Genome assembly (visualization)
GRCh38
909
hg19
Lab
44
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
organ_slims!
bodily fluid
files.file_type!
txt
assembly!
GRCh38
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
See all biosamples
Download