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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
88
ChIP-seq
37
snATAC-seq
33
single cell RNA-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
230
Transcription
88
DNA binding
58
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
99
February, 2023
45
February, 2021
45
May, 2020
40
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
3
October, 2022
Available data
196
bigWig
186
bam
169
fastq
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
407
Homo sapiens
Biosample type
367
primary cell
31
tissue
9
cell line
Organ
106
pancreas
76
epithelium
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4231
AMP
236
T1D
171
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
228
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
30
audit script error
9
inconsistent ontology term
organ_slims!
bodily fluid
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
27
33
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 35 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
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