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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
104
total RNA-seq
10
ATAC-seq
1
WGBS
Assay category
106
DNA binding
104
Transcription
10
DNA accessibility
1
DNA methylation
Target of assay
70
control
21
transcription factor
15
histone
15
histone modification
8
broad histone mark
8
recombinant protein
7
narrow histone mark
3
RNA binding protein
Date released
95
February, 2021
65
November, 2017
21
October, 2019
15
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
2
November, 2018
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
221
Homo sapiens
Biosample type
1347
tissue
500
primary cell
276
in vitro differentiated cells
221
cell line
3
stem cell
Organ
73
liver
66
artery
66
blood vessel
66
heart
66
vasculature
56
pancreas
50
epithelium
14
kidney
8
embryo
6
blood
bodily fluid
Project
217
AMP
4
T1D
Genome assembly (visualization)
158
hg19
140
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
bodily fluid
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
66
5
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
15
33
1
H1-hESC
8
Panc1
7
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