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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
399
DNA binding
52
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
294
transcription factor
89
recombinant protein
68
control
54
RNA binding protein
34
histone
34
histone modification
20
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
46
November, 2018
29
February, 2021
29
October, 2019
15
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
456
bam
411
bigWig
367
fastq
338
bed narrowPeak
301
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
456
Homo sapiens
Biosample type
1775
tissue
597
primary cell
456
cell line
290
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
heart
66
vasculature
63
pancreas
60
blood
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
452
AMP
4
T1D
Genome assembly (visualization)
391
hg19
345
GRCh38
Lab
456
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bodily fluid
heart
BIOSAMPLE
ASSAY
456 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
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