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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
134
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
567
February, 2021
283
May, 2020
273
May, 2021
243
October, 2019
235
August, 2017
214
June, 2019
164
July, 2018
149
November, 2017
115
May, 2019
82
July, 2019
73
April, 2019
72
September, 2018
61
October, 2018
58
November, 2019
52
December, 2017
49
April, 2018
49
August, 2021
39
February, 2018
24
May, 2022
20
November, 2018
16
March, 2020
15
October, 2017
12
January, 2019
11
September, 2017
6
November, 2020
5
December, 2019
4
December, 2018
3
August, 2018
3
June, 2018
1
March, 2019
Available data
240
fastq
235
bam
225
bigWig
118
bed narrowPeak
89
tsv
85
tagAlign
40
bigBed narrowPeak
39
bed broadPeak
14
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
228
Homo sapiens
Biosample type
147
tissue
56
primary cell
32
in vitro differentiated cells
Organ
161
pancreas
37
connective tissue
29
epithelium
22
liver
5
adipose tissue
Project
235
AMP
Genome assembly (visualization)
205
hg19
203
GRCh38
Lab
235
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bodily fluid
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
235 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
15
89
1
1
liver
21
pancreas
14
adipose tissue
2
2
right lobe of liver
1
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primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
31
1
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