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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
11
ATAC-seq
1
snATAC-seq
Assay category
216
DNA accessibility
53
DNA binding
5
3D chromatin structure
2
Transcription
Date released
187
June, 2019
9
November, 2018
7
February, 2023
7
October, 2019
4
February, 2021
1
May, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
349
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
216
Homo sapiens
Biosample type
177
tissue
27
primary cell
11
in vitro differentiated cells
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
18
ureter
16
connective tissue
16
epithelium
11
vasculature
9
blood vessel
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
216
AMP
Genome assembly (visualization)
204
GRCh38
193
hg19
Lab
213
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
1
audit script error
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
216 results
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Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
+ See 1 more…
cell line
Panc1
1
See all biosamples
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