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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
total RNA-seq
22
snATAC-seq
Assay category
79
DNA accessibility
65
Transcription
41
DNA methylation
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
25
tsv
24
bam
24
fastq
18
bed narrowPeak
7
txt
1
bed bed3+
Organism
185
Homo sapiens
Biosample type
134
primary cell
51
tissue
Organ
105
pancreas
80
epithelium
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
liver
1
nerve
1
spinal cord
Project
134
HPAP
51
AMP
Genome assembly (visualization)
19
hg19
Lab
134
Klaus Kaestner, Upenn
Karen Mohlke, UNC
27
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
bodily fluid
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
185 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
18
6
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
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