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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
86
ChIP-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
98
Transcription
86
DNA binding
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
45
May, 2020
5
February, 2023
3
March, 2020
Available data
184
bam
184
bigWig
98
tsv
86
bed narrowPeak
84
tagAlign
Organism
205
Homo sapiens
Biosample type
196
primary cell
tissue
9
cell line
Organ
8
blood
bodily fluid
4
epithelium
4
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
1545
AMP
324
HPAP
205
T1D
4
community
1
ITG
Genome assembly (visualization)
184
GRCh38
184
hg19
Lab
201
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
organ_slims!
bodily fluid
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
biosample_type!
tissue
BIOSAMPLE
ASSAY
205 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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cell line
EndoC_BH1
2
2
3
2
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