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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
703
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
703
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
398
transcription factor
156
histone modification
155
histone
146
control
85
broad histone mark
82
recombinant protein
74
RNA binding protein
69
narrow histone mark
25
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
94
December, 2017
72
November, 2018
58
October, 2018
39
February, 2018
24
May, 2022
17
October, 2017
12
January, 2019
8
December, 2018
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2723
bam
2501
bigWig
1468
bed narrowPeak
1326
tsv
889
fastq
879
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
882
Homo sapiens
Biosample type
primary cell
377
tissue
367
cell line
141
in vitro differentiated cells
4
stem cell
Organ
465
liver
213
pancreas
98
connective tissue
60
blood
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
889
AMP
Genome assembly (visualization)
728
hg19
668
GRCh38
5
hg18
Lab
863
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
bodily fluid
month_released!
December, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
889 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
28
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
cell line
HepG2
360
5
1
1
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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