Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1811
ChIP-seq
1483
total RNA-seq
524
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
1
tar
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
3
AMP
Genome assembly (visualization)
3
hg19
Lab
3
AMP-T2D consortium
organ_slims!
bodily fluid
month_released!
July, 2019
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
3 results
search-icon
table-tab-icon
Clear Filters
FAIRE-seq
tissue
islet of Langerhans
1
pancreas
1
primary cell
endothelial cell of umbilical vein
1
Download