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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
991
total RNA-seq
905
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
15
WGBS
5
Hi-C
5
RRBS
5
pCHi-C
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1171
Transcription
905
DNA binding
460
DNA accessibility
20
DNA methylation
5
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1834
bam
1698
bigWig
1001
tsv
975
bed narrowPeak
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2651
Homo sapiens
Biosample type
2660
tissue
1048
primary cell
590
cell line
386
in vitro differentiated cells
6
stem cell
Organ
536
connective tissue
490
pancreas
477
adipose tissue
350
liver
295
kidney
286
heart
252
brain
158
bone element
123
blood vessel
123
vasculature
117
limb
72
artery
70
musculature of body
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
2567
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1789
GRCh38
1677
hg19
Lab
2308
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
bodily fluid
month_released!
March, 2020
July, 2019
BIOSAMPLE
ASSAY
2660 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
290
69
66
6
1
7
3
4
4
1
adipose tissue
382
2
3
3
liver
164
145
20
1
2
3
1
kidney
49
27
75
64
13
6
1
bone element
84
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