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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ChIP-seq
113
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
379
DNA binding
114
Transcription
30
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
265
transcription factor
77
control
73
recombinant protein
37
histone
37
histone modification
36
RNA binding protein
19
broad histone mark
18
narrow histone mark
15
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
November, 2018
44
August, 2021
30
October, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
5
January, 2019
1
December, 2018
1
March, 2023
1
May, 2020
1
October, 2022
Available data
476
bam
422
bigWig
321
fastq
306
bed narrowPeak
257
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
551
Homo sapiens
Biosample type
2751
tissue
1079
primary cell
554
cell line
394
in vitro differentiated cells
10
stem cell
Organ
355
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
46
blood
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
544
AMP
9
T1D
1
community
Genome assembly (visualization)
433
hg19
365
GRCh38
Lab
508
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
1
Anna Gloyn, Oxford
Audit category:
92
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
organ_slims!
bodily fluid
month_released!
November, 2018
assay_title!
siRNA RNA-seq
BIOSAMPLE
ASSAY
554 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
EndoC_BH1
15
33
19
6
1
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
Panc1
13
1
1
H1-hESC
8
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