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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
21
ChIP-seq
Assay category
196
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
15
August, 2017
November, 2018
8
October, 2019
6
November, 2017
1
November, 2020
Available data
2784
bam
2624
bigWig
1481
tsv
1396
bed narrowPeak
904
fastq
670
bigBed narrowPeak
378
tagAlign
261
bed bed3+
254
bed broadPeak
217
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
167
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
36
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
pancreas
4
vein
2
liver
2
nerve
1
adipose tissue
Project
217
AMP
Genome assembly (visualization)
213
GRCh38
194
hg19
Lab
217
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
bodily fluid
month_released!
November, 2018
biosample_type!
cell line
BIOSAMPLE
ASSAY
217 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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