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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
1016
histone modification
1015
histone
513
narrow histone mark
501
broad histone mark
411
transcription factor
334
control
85
RNA binding protein
73
recombinant protein
21
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
3
August, 2017
3
December, 2017
Available data
21
bam
21
bed narrowPeak
21
bigWig
21
fastq
19
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
15
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
18
liver
8
blood
bodily fluid
2
connective tissue
1
epithelium
Project
21
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
4
inconsistent control run_type
organ_slims!
bodily fluid
month_released!
November, 2018
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
cell line
HepG2
15
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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