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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
31
total RNA-seq
14
ATAC-seq
4
single cell RNA-seq
2
RNA microarray
1
Hi-C
Assay category
39
DNA binding
35
Transcription
14
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
4
control
3
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bam
81
fastq
80
bigWig
49
bed narrowPeak
35
tsv
17
bigBed narrowPeak
1
csv
Organism
91
Homo sapiens
Biosample type
78
primary cell
10
tissue
2
in vitro differentiated cells
1
cell line
Organ
72
pancreas
67
epithelium
27
blood
bodily fluid
7
spleen
6
liver
3
kidney
Project
91
AMP
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
91
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
32
missing controlled_by
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
Hi-C
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
tissue
spleen
7
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
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