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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
55
ChIP-seq
49
single cell RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
169
Transcription
55
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
236
bam
232
bigWig
164
tsv
123
fastq
61
bed narrowPeak
61
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
241
Homo sapiens
Biosample type
146
tissue
49
primary cell
46
cell line
Organ
164
pancreas
53
liver
33
epithelium
15
blood
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
241
AMP
Genome assembly (visualization)
231
GRCh38
223
hg19
Lab
241
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
241 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic cell
4
pancreatic delta cell
4
+ See 10 more…
cell line
HepG2
45
1
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