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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
16
ATAC-seq
16
total RNA-seq
3
single cell RNA-seq
Assay category
30
DNA binding
19
Transcription
16
DNA accessibility
Target of assay
16
histone
16
histone modification
14
control
8
broad histone mark
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
50
bam
50
fastq
36
bigWig
21
bed narrowPeak
15
tsv
5
bigBed narrowPeak
2
bed bed3+
Organism
65
Homo sapiens
Biosample type
39
in vitro differentiated cells
21
tissue
5
primary cell
Organ
14
kidney
13
embryo
11
pancreas
5
epithelium
1
adipose tissue
1
connective tissue
Project
65
AMP
Genome assembly (visualization)
50
GRCh38
39
hg19
Lab
51
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent control read length
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
kidney
11
3
islet of Langerhans
6
adipose tissue
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
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