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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
29
DNase-seq
16
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
277
DNA accessibility
275
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1065
Homo sapiens
Biosample type
2258
tissue
1065
primary cell
379
in vitro differentiated cells
200
cell line
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
bodily fluid
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
545
AMP
324
HPAP
195
T1D
1
ITG
Genome assembly (visualization)
615
hg19
525
GRCh38
Lab
510
AMP-T2D consortium
324
Klaus Kaestner, Upenn
230
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bodily fluid
liver
bone element
BIOSAMPLE
ASSAY
1065 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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