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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
36
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
3
ATAC-seq
3
WGBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
94
DNA binding
40
DNA accessibility
14
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
63
histone
63
histone modification
40
broad histone mark
25
control
23
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
42
October, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
123
bam
115
bigWig
101
bed narrowPeak
86
bigBed narrowPeak
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
26
fastq
15
tagAlign
15
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
164
Homo sapiens
Biosample type
150
tissue
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
118
hg19
100
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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