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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
111
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
111
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
166
May, 2020
46
December, 2017
41
August, 2017
40
May, 2022
8
July, 2019
7
November, 2018
4
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
252
bam
229
bigWig
154
tsv
77
bed narrowPeak
76
fastq
46
bigBed narrowPeak
37
tagAlign
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
317
Homo sapiens
Biosample type
392
cell line
317
tissue
12
primary cell
10
in vitro differentiated cells
Organ
534
connective tissue
476
adipose tissue
473
pancreas
317
liver
289
kidney
255
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
317
AMP
Genome assembly (visualization)
232
hg19
210
GRCh38
Lab
277
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
317 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
103
20
2
3
1
1
1
1
1
right lobe of liver
3
8
1
2
1
2
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