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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
37
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
May, 2019
15
November, 2017
12
February, 2020
5
October, 2019
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
105
Homo sapiens
Biosample type
87
tissue
18
primary cell
Organ
861
pancreas
685
liver
636
connective tissue
474
adipose tissue
471
epithelium
347
heart
339
kidney
204
vasculature
199
blood vessel
159
bone element
129
artery
107
limb
105
brain
73
musculature of body
68
blood
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
74
GRCh38
65
hg19
Lab
105
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
4
14
1
1
1
temporal lobe
10
1
1
angular gyrus
8
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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