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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
7
Transcription
4
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
72
bam
55
bigWig
50
bed narrowPeak
48
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
80
tissue
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
80
AMP-T2D consortium
organ_slims!
bone element
assay_title!
DNase-seq
assay_title!!
DNase-seq
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
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