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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
63
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
May, 2022
February, 2021
3
February, 2023
1
October, 2022
Available data
2820
bam
2618
bigWig
1794
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
68
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
6
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
64
tissue
3
in vitro differentiated cells
1
cell line
Organ
57
kidney
6
pancreas
bone element
4
skeleton
1
musculature of body
Project
68
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
bone element
assay_title!
MeRIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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