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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
129
DNA binding
74
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
14
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
209
bigWig
194
bam
185
bed narrowPeak
165
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
373
Homo sapiens
Biosample type
305
tissue
66
cell line
2
primary cell
Organ
895
pancreas
786
liver
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
373
AMP
Genome assembly (visualization)
251
GRCh38
179
hg19
Lab
333
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
organ_slims!
bone element
connective tissue
assay_title!
WGBS
BIOSAMPLE
ASSAY
373 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
heart right ventricle
13
17
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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