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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
133
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
133
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
12
July, 2019
8
January, 2021
2
February, 2020
2
January, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
502
bam
480
bigWig
400
tsv
103
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
557
Homo sapiens
Biosample type
487
tissue
61
cell line
10
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
550
AMP
8
T1D
Genome assembly (visualization)
481
hg19
478
GRCh38
Lab
550
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
bone element
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
558 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 2 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
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