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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
60
ATAC-seq
49
snATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
Transcription
109
DNA accessibility
88
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
101
May, 2021
101
May, 2022
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
6
February, 2021
3
March, 2020
3
September, 2020
1
March, 2023
Available data
101
zippedFastqFolder
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
16
fastq
6
tsv
1
hic
Organism
265
Homo sapiens
Biosample type
225
primary cell
34
tissue
7
cell line
Organ
121
pancreas
98
epithelium
10
lung
8
blood
8
bodily fluid
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
138
T1D
117
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
99
GRCh38
88
hg19
Lab
134
Kyle Gaulton, UCSD
117
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
audit script error
3
inconsistent ontology term
organ_slims!
bone element
audit.ERROR.category!
audit script error
assay_slims!
Transcription
award.project!
AMP
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
pancreatic beta cell
16
16
Langerhans cell
21
peripheral blood mononuclear cell
8
+ See 15 more…
tissue
islet of Langerhans
2
11
6
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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