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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
63
Transcription
3
DNA accessibility
Date released
57
August, 2021
6
May, 2022
3
February, 2023
1
October, 2022
Available data
3326
bam
3111
bigWig
1809
bed narrowPeak
1533
tsv
1331
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
153
zippedFastqFolder
67
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
8
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
66
Homo sapiens
Biosample type
63
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
57
kidney
6
pancreas
4
skeleton
Project
67
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
AMP-T2D consortium
Audit category:
audit script error
1
inconsistent ontology term
organ_slims!
bone element
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
kidney
49
8
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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