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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
59
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
32
June, 2019
May, 2019
5
July, 2019
3
February, 2020
Available data
101
bam
85
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
109
Homo sapiens
Biosample type
109
tissue
Organ
940
pancreas
791
liver
684
connective tissue
514
epithelium
491
adipose tissue
372
heart
342
kidney
258
brain
185
vasculature
179
blood vessel
bone element
136
artery
115
limb
88
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
109
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
audit.ERROR.category!
audit script error
month_released!
May, 2019
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
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