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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
Assay category
399
DNA binding
Target of assay
780
histone modification
779
histone
496
transcription factor
399
narrow histone mark
379
broad histone mark
308
control
101
RNA binding protein
89
recombinant protein
27
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
328
bigWig
325
bed narrowPeak
302
bam
127
tagAlign
123
bigBed narrowPeak
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
397
Homo sapiens
Biosample type
324
tissue
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
38
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
395
AMP
4
T1D
Genome assembly (visualization)
308
GRCh38
299
hg19
Lab
372
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
bone element
audit.WARNING.category!
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
399 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
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