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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
31
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
182
DNA accessibility
31
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
163
June, 2019
15
December, 2017
14
August, 2017
9
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2242
bam
2012
bigWig
1272
tsv
1055
bed narrowPeak
538
bigBed narrowPeak
500
fastq
289
tagAlign
229
bed broadPeak
217
bed bed3+
192
bigBed broadPeak
73
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
7
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
217
Homo sapiens
Biosample type
192
tissue
primary cell
19
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
22
pancreas
18
ureter
9
connective tissue
5
blood vessel
5
liver
5
vasculature
4
artery
3
embryo
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
217
AMP
Genome assembly (visualization)
209
GRCh38
201
hg19
Lab
215
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
bone element
biosample_type!
primary cell
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
217 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
islet of Langerhans
14
kidney
13
+ See 41 more…
in vitro differentiated cells
Posterior foregut
3
adipocyte
1
1
1
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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