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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
731
histone modification
730
histone
460
transcription factor
378
narrow histone mark
351
broad histone mark
308
control
100
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
35
bam
35
bed narrowPeak
35
bigWig
35
fastq
33
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
26
cell line
3
in vitro differentiated cells
2
tissue
Organ
19
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bone element
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
16
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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