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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
682
ChIP-seq
249
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
8
March, 2020
1
August, 2018
1
February, 2021
1
May, 2020
Available data
7
tsv
3
bedpe bed3+
2
ibed
1
bed bed3+
1
fastq
Organism
11
Homo sapiens
Biosample type
25
tissue
16
primary cell
6
cell line
5
in vitro differentiated cells
4
stem cell
Organ
2
kidney
2
liver
1
adipose tissue
1
connective tissue
1
mammary gland
Project
11
AMP
Genome assembly (visualization)
3
hg19
Lab
11
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
bone element
BIOSAMPLE
ASSAY
11 results
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pCHi-C
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
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