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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
142
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
116
May, 2021
46
August, 2017
42
August, 2021
37
February, 2018
27
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
247
bam
215
bigWig
131
tsv
101
fastq
93
bed narrowPeak
36
tagAlign
15
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
338
Homo sapiens
Biosample type
2519
tissue
1072
primary cell
338
in vitro differentiated cells
290
cell line
8
stem cell
Organ
75
connective tissue
24
embryo
20
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
338
AMP
Genome assembly (visualization)
253
hg19
221
GRCh38
4
hg18
Lab
296
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
organ_slims!
bone element
target.investigated_as!
transcription factor
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
338 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
45
5
8
1
1
cardiomyocytes
59
embryonic stem cell
28
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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