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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
131
total RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
RRBS
Assay category
338
DNA binding
305
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
184
control
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
104
August, 2017
79
October, 2019
76
November, 2017
58
February, 2023
47
September, 2023
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
February, 2021
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
167
bed narrowPeak
158
tsv
133
tagAlign
85
bigWig
83
fastq
68
bigBed narrowPeak
68
txt
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
891
Homo sapiens
Biosample type
894
tissue
459
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
160
heart
122
brain
93
liver
92
pancreas
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
799
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1753
GRCh38
hg19
Lab
625
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
8
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
bone element
assembly!
hg19
BIOSAMPLE
ASSAY
894 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
RNA microarray
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
3
1
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
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