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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
40
ChIP-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
Transcription
40
DNA binding
34
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
120
May, 2021
May, 2020
23
February, 2023
16
January, 2021
6
May, 2022
Available data
175
bigWig
159
bam
bed narrowPeak
84
tagAlign
51
tsv
24
fastq
6
txt
2
bed bed3+
Organism
165
Homo sapiens
Biosample type
79
primary cell
47
in vitro differentiated cells
34
tissue
5
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
106
T1D
59
AMP
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
1950
AMP-T2D consortium
324
Klaus Kaestner, Upenn
165
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
files.file_type!
bed narrowPeak
month_released!
May, 2020
BIOSAMPLE
ASSAY
165 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
51
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
2
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
11
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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