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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
1
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
1
October, 2022
Available data
3326
bam
3106
bigWig
1805
bed narrowPeak
1542
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
70
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
69
Homo sapiens
Biosample type
69
tissue
1
cell line
Organ
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
70
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
organ_slims!
bone element
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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