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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
105
Transcription
88
DNA binding
13
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
152
May, 2021
45
May, 2020
23
February, 2023
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
227
Homo sapiens
Biosample type
195
primary cell
23
tissue
9
cell line
Organ
26
pancreas
4
epithelium
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4068
AMP
227
T1D
190
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
219
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
organ_slims!
bone element
month_released!
January, 2021
May, 2022
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
7
2
11
2
thymus
1
cell line
EndoC_BH1
2
2
3
2
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