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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
435
total RNA-seq
27
snATAC-seq
18
single cell RNA-seq
6
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
453
Transcription
33
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
499
February, 2021
411
August, 2017
400
November, 2017
398
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
168
July, 2018
162
February, 2023
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
449
tsv
440
bam
437
bigWig
45
fastq
6
csv
5
txt
4
bed bedgraph
3
bed narrowPeak
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
499
Homo sapiens
Biosample type
395
tissue
48
primary cell
30
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
bone element
66
artery
66
blood vessel
66
heart
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
454
AMP
45
HPAP
Genome assembly (visualization)
444
hg19
438
GRCh38
Lab
454
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
bone element
vasculature
BIOSAMPLE
ASSAY
499 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
kidney (Cortex-Medulla)
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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