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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
9
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
GRO-seq
1
Hi-C
1
RRBS
Assay category
474
DNA binding
9
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
330
transcription factor
84
control
82
recombinant protein
57
RNA binding protein
57
histone modification
56
histone
29
broad histone mark
27
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
76
December, 2017
53
November, 2018
28
August, 2017
13
February, 2018
5
January, 2019
1
December, 2018
1
January, 2018
Available data
717
bam
651
bigWig
492
fastq
455
bed narrowPeak
358
bigBed narrowPeak
188
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
16
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
492
Homo sapiens
Biosample type
367
cell line
83
tissue
42
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
492
AMP
Genome assembly (visualization)
409
hg19
362
GRCh38
1
hg18
Lab
492
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bone element
BIOSAMPLE
ASSAY
492 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
GRO-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
hepatocyte
15
Hepatic endoderm
4
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