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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
261
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1165
Transcription
458
DNA accessibility
261
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
142
August, 2017
120
July, 2018
87
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1357
bam
1174
bigWig
1018
tsv
456
bed narrowPeak
285
fastq
249
bigBed narrowPeak
183
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
69
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
Organism
1970
Homo sapiens
Biosample type
1973
tissue
850
primary cell
612
cell line
277
in vitro differentiated cells
8
stem cell
Organ
502
connective tissue
444
adipose tissue
426
pancreas
291
liver
279
kidney
218
heart
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1878
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1281
GRCh38
1229
hg19
Lab
1656
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
5
inconsistent ontology term
Audit category:
missing controlled_by
organ_slims!
bone element
target.investigated_as!
histone modification
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1973 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
14
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
80
20
1
2
3
1
1
1
1
kidney
49
7
75
64
13
6
1
1
1
heart left ventricle
3
11
2
18
3
4
1
1
1
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