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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
38
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
5
July, 2019
3
February, 2020
1
May, 2019
Available data
60
bam
43
bigWig
38
bed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
67
Homo sapiens
Biosample type
67
tissue
Organ
514
connective tissue
456
adipose tissue
432
pancreas
291
liver
279
kidney
218
heart
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
67
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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