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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
399
Transcription
19
DNA binding
8
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
398
tsv
23
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
tagAlign
Organism
428
Homo sapiens
Biosample type
426
tissue
2
primary cell
Organ
674
pancreas
630
liver
592
connective tissue
428
adipose tissue
327
epithelium
272
heart
228
brain
211
kidney
202
vasculature
196
blood vessel
128
artery
97
limb
74
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
428
AMP
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
382
1
3
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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