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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
53
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
53
DNA binding
Target of assay
48
transcription factor
8
RNA binding protein
5
chromatin remodeller
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
1
other context
1
other post-translational modification
Date released
182
June, 2019
51
November, 2017
9
November, 2018
4
August, 2017
3
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
3212
bam
3019
bigWig
1688
bed narrowPeak
1532
tsv
1355
fastq
963
bigBed narrowPeak
tagAlign
309
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
252
Homo sapiens
Biosample type
173
tissue
48
cell line
30
primary cell
1
in vitro differentiated cells
Organ
78
kidney
52
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
252
AMP
Genome assembly (visualization)
237
GRCh38
229
hg19
Lab
250
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
bone marrow
blood vessel
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
47
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
skeletal muscle myoblast
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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