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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
79
Homo sapiens
Biosample type
65
tissue
14
primary cell
Organ
926
pancreas
704
liver
660
connective tissue
517
epithelium
481
adipose tissue
384
heart
354
kidney
227
vasculature
221
blood vessel
159
bone element
156
brain
133
artery
119
limb
79
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
60
hg19
53
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
bone marrow
files.file_type!
tagAlign
month_released!
February, 2020
BIOSAMPLE
ASSAY
79 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
4
1
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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