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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
20
ChIP-seq
16
pCHi-C
5
ATAC-seq
Assay category
59
Transcription
20
DNA binding
5
DNA accessibility
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
100
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
61
bigWig
51
bam
51
tsv
2
bed bed3+
Organism
100
Homo sapiens
Biosample type
71
primary cell
27
in vitro differentiated cells
2
tissue
Organ
1
bone element
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
67
T1D
33
AMP
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
158
AMP-T2D consortium
100
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
bone marrow
target.investigated_as!
histone
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
primary cell
monocyte
51
1
CD8-positive, alpha-beta T cell
2
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
17
5
tissue
pancreas
1
thymus
1
See all biosamples
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