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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1856
ChIP-seq
509
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
25
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
158
Transcription
Date released
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
tsv
128
fastq
100
bam
100
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
158
Homo sapiens
Biosample type
87
primary cell
71
tissue
Organ
59
kidney
9
lung
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
17
AMP
9
LungMap
Lab
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
AMP-T2D consortium
organ_slims!
bone marrow
month_released!
October, 2017
files.file_type!
tsv
BIOSAMPLE
ASSAY
158 results
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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
59
lung
9
heart
1
liver
1
skeletal muscle tissue
1
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