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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
163
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
303
May, 2021
299
November, 2017
264
August, 2017
260
May, 2020
207
October, 2019
206
June, 2019
164
July, 2018
92
May, 2019
85
July, 2019
72
September, 2018
68
December, 2017
62
April, 2019
59
November, 2018
49
April, 2018
46
August, 2021
36
October, 2018
35
May, 2024
31
February, 2018
30
November, 2019
28
December, 2018
20
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
279
fastq
274
bam
264
bigWig
135
bed narrowPeak
89
tsv
85
tagAlign
40
bigBed narrowPeak
39
bed broadPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
258
Homo sapiens
Biosample type
176
tissue
44
in vitro differentiated cells
44
primary cell
Organ
157
pancreas
61
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
264
AMP
Genome assembly (visualization)
262
hg19
240
GRCh38
Lab
264
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bone marrow
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
264 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
25
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
43
1
primary cell
skeletal muscle myoblast
13
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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